PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130761.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 276aa    MW: 30142.2 Da    PI: 8.9591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087183205123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+  Fs+   L  H+r+H
  XP_009130761.1 183 HECSICKAEFSSGQALGGHMRRH 205
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.24E-10109132No hitNo description
PfamPF139121.7E-11109134IPR007087Zinc finger, C2H2
SMARTSM003550.061110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576677.24E-10178205No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4180207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12182207IPR007087Zinc finger, C2H2
SMARTSM003550.031183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTSVHEETRL VLLIKGKRTK RQRSVSPHMN AEAMSSVCKE ERSLEAREGV GEIEFRGATD  60
EDQDMANCLM LLSQGHKSNT SGDPLLTQKI GFLSNKKPVA SLGLGLNGVY QCKTCDKSFH  120
SFQALGGHRT SHKKPKLGAI ILKCGEKKSA SAVKTVEAAR VVGSFLSLQV TSSEGTKKQE  180
KTHECSICKA EFSSGQALGG HMRRHRGLTL NANANSTTRT EISSSHHQES IREKNFIELD  240
LNLPAPEDEP KFVFASKDQI LLFAAAASNS LIDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130761.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A397ZQZ30.0A0A397ZQZ3_BRACM; Uncharacterized protein
TrEMBLM4CNH80.0M4CNH8_BRARP; Uncharacterized protein
STRINGBra005766.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-144C2H2 family protein