PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130758.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 364aa    MW: 40184.5 Da    PI: 6.0949
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.11.7e-2484164271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr+++ k   ++ek+e+ g++t+neva+eLv+e              d+kn+rRR+YD+lNVL+a+++++k  ++ei w+g
  XP_009130758.1  84 NGRGLRQFSLK---VCEKVESkGRTTYNEVADELVAEfalpnnddtspdqyDEKNIRRRVYDALNVLMAMDIVSK-YQKEILWRG 164
                     789********...*****999*****************************************************.9999***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.9E-1181364IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.0E-4379169IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-3183164IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.7E-2285164IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.13E-2086165IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.95E-41169273IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.41E-40171298No hitNo description
SMARTSM011383.9E-58171322IPR014889Transcription factor DP, C-terminal
PfamPF087811.0E-41172302IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTTPPSNSIH NHHEDSPVKN PPSTTVSAQS VSSSGSVGSP LSRAEQPTTV ATTPASDDPA  60
SQLASGSGQK KKRRGQRASG PDKNGRGLRQ FSLKVCEKVE SKGRTTYNEV ADELVAEFAL  120
PNNDDTSPDQ YDEKNIRRRV YDALNVLMAM DIVSKYQKEI LWRGLPRSSL SDIEELKAER  180
LSLRSRIEKK TEYSQELEEQ YVGLQNLIRR NEHLYSSGNA PNGGVTLPFI LVQTRPNATV  240
EVEISEDMQL VHFDFNTSTP FELHDDNFVL KTMKFCDQPP LNNGHNNNSH ETSHSFVPEE  300
NKEGLSTDPK LPQQVDTDQS HHQLHAQPQI IPTPVTINAS AASNAPVTSP PLSGIIKSSV  360
KTEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3377169193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.139180.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130758.10.0PREDICTED: transcription factor-like protein DPB isoform X4
SwissprotQ9FNY21e-163DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM4CNH50.0M4CNH5_BRARP; Uncharacterized protein
STRINGBra005763.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-158Transcription factor DP