PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | E2F/DP | ||||||||
Protein Properties | Length: 365aa MW: 40353.6 Da PI: 6.0949 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 76.8 | 2.1e-24 | 83 | 165 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr+++ k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++++k ++ei w+g XP_009130757.1 83 NGRGLRQFSLK---VCEKVESkGRTTYNEVADELVAEfalpnnddtspdqqqyDEKNIRRRVYDALNVLMAMDIVSK-YQKEILWRG 165 789********...*****999*******************************************************.9999***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 2.2E-120 | 1 | 365 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 4.3E-43 | 78 | 170 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.9E-31 | 82 | 165 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.3E-22 | 84 | 165 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.67E-20 | 85 | 166 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 8.55E-41 | 170 | 274 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 3.9E-58 | 172 | 323 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.41E-40 | 172 | 299 | No hit | No description |
Pfam | PF08781 | 1.1E-41 | 173 | 303 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MTTPPSNSIH NHHEDSPVKN PPSTTVSAQS VSSSGSVGSP LSRAEQPTTV ATTPASDDPA 60 SQLASGGQKK KRRGQRASGP DKNGRGLRQF SLKVCEKVES KGRTTYNEVA DELVAEFALP 120 NNDDTSPDQQ QYDEKNIRRR VYDALNVLMA MDIVSKYQKE ILWRGLPRSS LSDIEELKAE 180 RLSLRSRIEK KTEYSQELEE QYVGLQNLIR RNEHLYSSGN APNGGVTLPF ILVQTRPNAT 240 VEVEISEDMQ LVHFDFNTST PFELHDDNFV LKTMKFCDQP PLNNGHNNNS HETSHSFVPE 300 ENKEGLSTDP KLPQQVDTDQ SHHQLHAQPQ IIPTPVTINA SAASNAPVTS PPLSGIIKSS 360 VKTEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 7e-32 | 76 | 170 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 72 | KKKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.13918 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009130757.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493733 | 0.0 | AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415. | |||
GenBank | AJ294532 | 0.0 | AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene). | |||
GenBank | AK228148 | 0.0 | AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08. | |||
GenBank | AY086018 | 0.0 | AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130757.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X3 | ||||
Swissprot | Q9FNY2 | 1e-167 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | M4CNH5 | 0.0 | M4CNH5_BRARP; Uncharacterized protein | ||||
STRING | Bra005763.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-162 | Transcription factor DP |