PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130756.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 365aa    MW: 40353.6 Da    PI: 6.0949
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.82.1e-2484166271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr+++ k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++++k  ++ei w+g
  XP_009130756.1  84 NGRGLRQFSLK---VCEKVESkGRTTYNEVADELVAEfalpnnddtspdqqqyDEKNIRRRVYDALNVLMAMDIVSK-YQKEILWRG 166
                     789********...*****999*******************************************************.9999***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.8E-1221365IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.3E-4379171IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.9E-3183166IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-2285166IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.67E-2086167IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.13E-41171274IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.75E-41173299No hitNo description
SMARTSM011381.8E-60173323IPR014889Transcription factor DP, C-terminal
PfamPF087811.2E-42174303IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTTPPSNSIH NHHEDSPVKN PPSTTVSAQS VSSSGSVGSP LSRAEQPTTV ATTPASDDPA  60
SQLASGSGQK KKRRGQRASG PDKNGRGLRQ FSLKVCEKVE SKGRTTYNEV ADELVAEFAL  120
PNNDDTSPDQ QQYDEKNIRR RVYDALNVLM AMDIVSKYQK EILWRGLPRS SLSDIEELKA  180
ERLSLRSRIE KKTEYSQELE EQYVGLQNLI RRNEHLYSSG NAPNGGVTLP FILVQTRPNA  240
TVEVEISEDM QLVHFDFNTT PFELHDDNFV LKTMKFCDQP PLNNGHNNNS HETSHSFVPE  300
ENKEGLSTDP KLPQQVDTDQ SHHQLHAQPQ IIPTPVTINA SAASNAPVTS PPLSGIIKSS  360
VKTEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-3277171193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.139180.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130756.10.0PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-168DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM4CNH50.0M4CNH5_BRARP; Uncharacterized protein
STRINGBra005763.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-163Transcription factor DP