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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 274aa MW: 30013.5 Da PI: 4.7878 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.6e-13 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+ E++++++a +++ + Wk+I +g +t q++s+ qky XP_009130741.1 45 RQSWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 89 899*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-16 | 39 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.067 | 40 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-6 | 42 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-18 | 43 | 92 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.8E-10 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 45 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-7 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MTSSLSSNPV VSEERPAETS TDLTETTTEA PEKKVRKAYT ISKSRQSWTE GEHDKFLEAL 60 QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVEKNGTFA HVPPPRPKRK AAHPYPQKAA 120 KSEISNLSGY GSWDDDTSAL LSIAVSEVIL PKDEIDTLCG GEVVIELNGS TSAVSPSASG 180 IGSSSRTLPD SEGLTPVNQA PSMQGLPDFA EVYNFIGSVF DPDSKGRMKK LKEMDPINFE 240 TVLLLMRNLT VNMSNPDFEP SSDAAEEGSE HLSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.17147 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009130741.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352624 | 1e-130 | AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130741.1 | 0.0 | PREDICTED: protein REVEILLE 4-like isoform X3 | ||||
Swissprot | Q6R0G4 | 1e-154 | RVE4_ARATH; Protein REVEILLE 4 | ||||
TrEMBL | A0A3P5ZRV4 | 0.0 | A0A3P5ZRV4_BRACM; Uncharacterized protein | ||||
STRING | Bra005751.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02840.2 | 1e-125 | LHY/CCA1-like 1 |
Publications ? help Back to Top | |||
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