PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 312aa MW: 35424.4 Da PI: 5.989

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.1	5.9e-20	171	222	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrdp+ +g +r++lg+f+ta eAa+a+++a+ +l+g+ XP_009130655.1 171 HYRGVRMRP-WGKFAAEIRDPTRRG--TRVWLGTFDTAIEAARAYDQAAFRLRGA 222 7******.******97665..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.6E-32	170	230	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-34	171	235	IPR001471	AP2/ERF domain
CDD	cd00018	4.39E-30	171	229	No hit	No description
SuperFamily	SSF54171	2.09E-22	171	231	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.881	171	229	IPR001471	AP2/ERF domain
Pfam	PF00847	6.7E-14	171	221	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	172	183	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	195	211	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000302	Biological Process	response to reactive oxygen species
GO:0001944	Biological Process	vasculature development
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009644	Biological Process	response to high light intensity
GO:0010200	Biological Process	response to chitin
GO:0051301	Biological Process	cell division
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MLPWKVSLID LRLFLPIYIH FHTLLYCQIE SFLLSINHLP PILCSLMATP SETSALFFIK 60 KYLLDELSPL PNATTTNPWE TSSDFSFFGS FDQTGFDFPE FETKPEITDT PLAPNDSFTF 120 QSNPPVVSQS NRKPPLKIAP PNRSEWIQFA AGKPQREQVP LPQVAAEEKR HYRGVRMRPW 180 GKFAAEIRDP TRRGTRVWLG TFDTAIEAAR AYDQAAFRLR GAKAIVNFPL EVGMWEPRAE 240 NGQNKRKRDG AEEEETRVVA KVVKTEESHG VEQVTSSLTG VDDWDLTEFL SMPLFSPLSP 300 HPPFGYPQLT VV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-28	170	236	4	70	ATERF1
3gcc_A	2e-28	170	236	4	70	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.17282	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00437	DAP	Transfer from AT4G17490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130655.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130655.1	0.0	PREDICTED: ethylene-responsive transcription factor 6-like
Swissprot	Q8VZ91	1e-129	EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBL	A0A398AM08	0.0	A0A398AM08_BRACM; Uncharacterized protein
STRING	Bra040158.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17490.1	1e-106	ethylene responsive element binding factor 6