PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130519.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 358aa    MW: 40229 Da    PI: 4.5379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12187230654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++P+ +      K++  +iL  A++Y+k+L
  XP_009130519.1 187 LMAERRRRKRLNDRLSMLRSIVPNiS------KMDRTSILGDAIDYMKEL 230
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.974181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16184249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-10187230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-5188230No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MELSTQINVF EELLVPTKQE TTDNYNYNTS INNLSFNGGF DHHQLFSNGW NIDYLCFDNE  60
EEDENTLLYS SSFMDLISQP PPLLLHQTPP LPPPSSSSPP LISSTASTFD DPFLEALQEI  120
IDSSSSSPPV MLPTSQEESF INHSSYPSPL VESDQSKSFS VGYCGGVVET TNKKKSKKLE  180
GQPSKNLMAE RRRRKRLNDR LSMLRSIVPN ISKMDRTSIL GDAIDYMKEL LDKINKLQDE  240
EQELVVSNSS HHSKLFGDIK DLNTNEPLVR NSPKFEVDRR DQDTRVEILC SPKPGLLLST  300
VNTLETLGLE IEQCVISCFS DFSLHASCSE VAQQRDFINS EDIKQALFRN AGYGGKCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13182255576Transcription factor MYC2
5gnj_B5e-13182255576Transcription factor MYC2
5gnj_E5e-13182255576Transcription factor MYC2
5gnj_F5e-13182255576Transcription factor MYC2
5gnj_G5e-13182255576Transcription factor MYC2
5gnj_I5e-13182255576Transcription factor MYC2
5gnj_M5e-13182255576Transcription factor MYC2
5gnj_N5e-13182255576Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194KKKSKKLEGQPSKNLMAERRRRK
2189196ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.52430.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130519.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL10.0BH093_ARATH; Transcription factor bHLH93
TrEMBLM4ESS20.0M4ESS2_BRARP; Uncharacterized protein
STRINGBra031852.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.10.0beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]