PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 39029.6 Da PI: 8.5521 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.6e-39 | 74 | 133 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvP+Ggg+rk kks XP_009130518.1 74 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGSLRNVPIGGGCRKTKKS 133 57899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-33 | 61 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-33 | 76 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.478 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MQNHFIYKFT PDETLFTNCS SISLALIILF LFLYFSRPII IMSSHTNLHS PKPDHRITGA 60 SHTKKPPSST ASQDQQTLKC PRCNSSNTKF CYYNNYSLSQ PRHFCKSCRR YWTRGGSLRN 120 VPIGGGCRKT KKSIKPNIIA PSSSSSQRFF SSTMEEASKF FTPPTAMDFQ LAGLSLNKIN 180 DLQLMNNQEV LGLRTTMEQV ETTPVDVGSG LTLMGFGDYN SNNNNHSPAT FTTDGNLATS 240 IETLSCLNQD LHWRLQQQRM AMFFGNSKEE TVVVERPQPL LYRNLEIVNS SPSPTTKKGE 300 NQTEWYFGNN NDNERVINNN ENNNTGGSDQ WNNGLQAWTD LNHYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009130518.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130518.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7-like | ||||
Swissprot | Q9LSL6 | 1e-167 | DOF57_ARATH; Dof zinc finger protein DOF5.7 | ||||
TrEMBL | M4ESS3 | 0.0 | M4ESS3_BRARP; Uncharacterized protein | ||||
STRING | Bra031853.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4950 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 1e-159 | Dof family protein |
Publications ? help Back to Top | |||
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