 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009130508.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 331aa MW: 37756 Da PI: 9.8261 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009130508.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 74.1 | 1.1e-23 | 6 | 55 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+++++s + +++s+R+++i+KKA+ELS+LC++ v+vi+++++g l+++++
XP_009130508.1 6 SSSSNSLAATSLSNRLKTIFKKASELSILCQVAVSVIYYGPNGDLKTWPK 55
78999*******************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MRASSSSSSN SLAATSLSNR LKTIFKKASE LSILCQVAVS VIYYGPNGDL KTWPKEKEVV 60
KDMALRYKVA TKRKKSSNLR DFLEGKLEND KNLKKNKKKT KREFENVKYP DCYPVLDHYS 120
PDQLHELVLS LQGTLSTMEE RIRVLEAKKQ RNTNLVHQTV QPSNPSKCSL YLYNHDDATL 180
SQLPLSASHS NQLINYQNHL RMQQQRLYDP CVSTTQGHPA LLSVQESRLK NQLMQQQEAY 240
GSHHNVRMMN NTTNSKVLGH PCPLKTIPKE FSFDLQKNPN DDMVGRPKYS QDFPNLFLAY 300
ADIPQLQTSS LPSIHQTIPN INLIPDNSRC P
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 93 | 101 | KKNKKKTKR |
