PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130458.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 185aa    MW: 21331.7 Da    PI: 4.5915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.83.1e-3431181128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdLp k+ +e ++wyf+s++         ++r+t++gyW + g d++++++
  XP_009130458.1   3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALQEGRQWYFYSRKT--------QERVTSNGYWGSVGIDEPIFTS 88 
                     79*************************999.99***************77778899*****9975........5799***************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk L+fy g++    +t+Wvm+ey+l
  XP_009130458.1  89 sTHKKVGIKKYLTFYLGDS----QTNWVMQEYSL 118
                     67888**********7654....68*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-431153IPR003441NAC domain
PROSITE profilePS5100541.943153IPR003441NAC domain
PfamPF023655.1E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLPG KALQEGRQWY  60
FYSRKTQERV TSNGYWGSVG IDEPIFTSST HKKVGIKKYL TFYLGDSQTN WVMQEYSLPD  120
SSSRSSKRSN RGSTSSTHKP DYSKWVICRV YEQNCSDEED DDGAELSCLD EVFLSLDDLD  180
EVSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-37115915171NO APICAL MERISTEM PROTEIN
1ut4_B7e-37115915171NO APICAL MERISTEM PROTEIN
1ut7_A7e-37115915171NO APICAL MERISTEM PROTEIN
1ut7_B7e-37115915171NO APICAL MERISTEM PROTEIN
3swm_A7e-37115918174NAC domain-containing protein 19
3swm_B7e-37115918174NAC domain-containing protein 19
3swm_C7e-37115918174NAC domain-containing protein 19
3swm_D7e-37115918174NAC domain-containing protein 19
3swp_A7e-37115918174NAC domain-containing protein 19
3swp_B7e-37115918174NAC domain-containing protein 19
3swp_C7e-37115918174NAC domain-containing protein 19
3swp_D7e-37115918174NAC domain-containing protein 19
4dul_A7e-37115915171NAC domain-containing protein 19
4dul_B7e-37115915171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667460.0KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130458.11e-136PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK61e-116NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3P6AL411e-135A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBLM4ESY51e-135M4ESY5_BRARP; Uncharacterized protein
STRINGBra031915.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-96xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]