PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130246.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 266aa    MW: 30438.4 Da    PI: 9.8815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002699122123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     +kC++C ksF+    L +H  t H
  XP_009130246.1  99 WKCGYCRKSFNEEKFLDQHFATrH 122
                     58*****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.51799122IPR007087Zinc finger, C2H2
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRLKESSPV IPLLLLLLFP LLLLSQVLGE SESTREGNAP EIHCSRHRSR AAWQIIQDYL  60
TPFVERERYQ IPNKCRLHPD NDLYRDQEQH KVHVDVYEWK CGYCRKSFNE EKFLDQHFAT  120
RHYNLLNTTG TKCLADLCGA LHCDFVLMSS KKGKSKCNPA AAAKNRHLCE SLANTCFPVS  180
QGPAASRLHE HFLRQFCDAH TCTGKTKPFP KGGKKKSGVF YLAVSILTLM LLPLFYLLVF  240
LHQREKRTGT QVLRRIVKTG KKTKPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.149140.0bud| flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130246.10.0PREDICTED: uncharacterized protein LOC103855036
TrEMBLA0A398AGF10.0A0A398AGF1_BRACM; Uncharacterized protein
TrEMBLM4EKB50.0M4EKB5_BRARP; Uncharacterized protein
STRINGBra029232.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-134C2H2-like zinc finger protein