PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 289aa MW: 31721.2 Da PI: 5.0495

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54.1	3.3e-17	131	182	3	54
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++kr rr+++NR++ArrsRqRK+++++ Le v++L++ N++L k+l ++ XP_009130000.1 131 DVKRIRRMYSNRISARRSRQRKQEQLADLESQVDSLKGVNSTLYKQLIDATQ 182 68*****************************************988765555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-14	129	193	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.358	131	177	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.34E-12	132	182	No hit	No description
Pfam	PF00170	4.3E-14	132	177	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-12	133	183	No hit	No description
CDD	cd14702	1.53E-17	134	185	No hit	No description
PROSITE pattern	PS00036	0	136	151	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.2E-4	200	278	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDGHTAKDIG MKKSASELAL QELLTKLLSR QESILDTSPL DPSFDLMNWD YTCELRDSLL 60 KSEILTPAGL FIDAQSSICE NLSADSPVSA NKPEAKRAAR GTVSVYTDDH SDEEDAETEA 120 SQSEMTNDPN DVKRIRRMYS NRISARRSRQ RKQEQLADLE SQVDSLKGVN STLYKQLIDA 180 TQQFRSAGTN NRVLKSDVET LRVKVKLAED LIARGSLTSS LNQLLQTHLS PPQHSINSLH 240 YTGNNTSPAI TVHSDQSLFP GITISGQNSS PGLGNVSSEA VSCVSDIWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	151	RRSRQRK
2	145	152	RRSRQRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.17443	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269\|PubMed:18841482}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:18841482}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130000.1	0.0	PREDICTED: basic leucine zipper 9-like
Swissprot	Q9FUD3	1e-166	BZIP9_ARATH; Basic leucine zipper 9
TrEMBL	M4DVC7	0.0	M4DVC7_BRARP; Uncharacterized protein
STRING	Bra020471.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6370	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-150	basic leucine zipper 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ortiz-Espín A, et al. Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions. J. Exp. Bot., 2017. 68(5): p. 1025-1038 [PMID:28184497] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]