PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129834.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 684aa    MW: 78187 Da    PI: 5.9538
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.28.9e-2167164290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..........dgkwevtkleleHn 86 
                      Y ++A+++GFs+rk++s++s++ g +++r+fvC+++g+++++kk ++ + r+r++ r+gC+akl ++k+           + +w+v+++++ Hn
  XP_009129834.1  67 HYTTFARKTGFSIRKARSTESHNLG-VYRRDFVCYRSGFNQPRKKPNVPHPRERKSLRCGCDAKLYLTKQVlaiegtttttKTQWYVSQFSNVHN 160
                     69*******************7777.***************************************9998733332233445789*********** PP

            FAR1  87 Hela 90 
                     Hel 
  XP_009129834.1 161 HELL 164
                     **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-1967164IPR004330FAR1 DNA binding domain
PfamPF105514.9E-17293379IPR018289MULE transposase domain
PROSITE profilePS509669.273562600IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-6566599IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-4575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MASKPLNNIW IRRQQCPCGD WKCYIRLEGD ESTTKTEIES TTSSSPSPSS SPYVGQIFRT  60
DEEAFEHYTT FARKTGFSIR KARSTESHNL GVYRRDFVCY RSGFNQPRKK PNVPHPRERK  120
SLRCGCDAKL YLTKQVLAIE GTTTTTKTQW YVSQFSNVHN HELLEDEQVR LLPAYRKIQQ  180
TDQERILLLS KAGFPVNRIV KLLELERGVQ LPFIEKDVRN FVRACKRSVQ ESDALLNEKR  240
ESDLMELLES CKGFAERDMG FVYEFTSDES GKVESLAWAY GECVQGYSMF GDVVVFDTSY  300
RSITYGLLLG VFFGMDNGGS AILLGCVLLQ DETCRSFTWA LQTFVRFMRG GHPQTIVTDI  360
DTGLKDAIER ELPNTNHVVF MCDVASKLAS WFSQDLGSHY DEFRAGFEML CRAGSIDEFE  420
QQWDLLVTRF GLVPDRHAAL LYSCRATWSP CCVRQHFLAQ TMTPEFSLSI DSFLKRIVAE  480
PTCMQALLEE VSVAASLAKQ IPQRVPYPTM KTCMPMEDHA RAVLTPYAFS VLQNEMVLSL  540
QYAVAEMANG PYILHHFKKM EGECCVFWNP ENEEIHCSCK EFEHSGILCR HSLRVLAVKN  600
CFHIPEQYFL VRWRQESSLV TEENQNGMGI GDDCVQTFQS LTETLLTESM VSKDRLDYTN  660
QELSALIDRV RNIEPANTCI SHDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129835.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_009129836.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A398AIM80.0A0A398AIM8_BRACM; Uncharacterized protein
STRINGBo2g152930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]