PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129810.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 366aa    MW: 40656.1 Da    PI: 4.8243
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1018e-32183237155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+
  XP_009129810.1 183 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPILTIYHVKSHLQKYRT 237
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-29181239IPR009057Homeodomain-like
SuperFamilySSF466893.23E-16181237IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-22183237IPR006447Myb domain, plants
PfamPF002493.0E-9185236IPR001005SANT/Myb domain
PfamPF143795.1E-21271317IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNNPVPCQAV SGGNSGGYMF PSPSGFCNVS PLSTHGRASQ TQPPVATTPS DRLAMQDCFL  60
EAQSMNHPLP EFSDPLDEFF DFSDHVPALN PQAESSDVMV GSTVEVHEKS EWQSWADQLM  120
SVDNGSEPNW SELLGDPSPH NLTPPTPSLD VPRQEVVANQ QQHQVVSFEE QLNSSASGGA  180
TTKQRMRWTP ELHEAFVEAV NQLGGSERAT PKAVLKLLNN PILTIYHVKS HLQKYRTARY  240
KPETSEATGE PQEKKMTSIE DIKSLDMKTS VEITQALRLQ MEVQKRLHEQ LETQRALQLQ  300
IEKQGRYLQM MFEKQQKLEE NKSSSSSKQC NGASAEVEFE SGVVTQAGDQ TESAVSVSRK  360
RAREDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-27183241260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.130100.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129807.10.0PREDICTED: protein PHR1-LIKE 1 isoform X1
RefseqXP_009129810.10.0PREDICTED: protein PHR1-LIKE 1 isoform X4
RefseqXP_018512073.10.0PREDICTED: protein PHR1-LIKE 1 isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLM4DVS80.0M4DVS8_BRARP; Uncharacterized protein
STRINGBra020622.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]