PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009129803.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 392aa MW: 43585.7 Da PI: 6.9997

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009129803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.2	1.7e-33	211	269	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp++v +tYeg+H+h XP_009129803.1 211 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHA 269 59********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-34	196	271	IPR003657	WRKY domain
SuperFamily	SSF118290	1.16E-29	204	271	IPR003657	WRKY domain
PROSITE profile	PS50811	32.202	206	271	IPR003657	WRKY domain
SMART	SM00774	1.6E-40	211	270	IPR003657	WRKY domain
Pfam	PF03106	5.2E-27	212	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MEKKIKEDHH QELQKEEPNS TKNTETTTSS STHMMNLITT SDHHQMELAG NNMNLSSSFD 60 IPISSPFAYS YFEDHSSNNP NSFLDLLRQD QHQFASSSNS SSFSFNAFPL QNNTNHIFTD 120 LPLSQPVTTK DESSEVVSTT PTSPNATSFS SSSNEAANDN INKEVTVKDQ EDGDQHGPKG 180 TKPQLKAKKK QQKKAREARV AFLTKSDIDN LDDGYRWRKY GQKAVKNSPY PRSYYRCTTV 240 GCGVKKRVER SSDDPSIVMT TYEGQHTHAF PMTPRGHIGM LTSPILDHGA TTASSSSSFS 300 IPQPRYLLSQ HHQPYNIMYN NNSLSMINRS SSSDGSFVNP GSSSFHGFGC DMSQASTSTT 360 AAIRDHGLLQ DILTSKIRSD TINTRTNEED NK

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MEKKIKEDHH QELQKEEPNS TKNTETTTSS STHMMNLITT SDHHQMELAG NNMNLSSSFD  60
IPISSPFAYS YFEDHSSNNP NSFLDLLRQD QHQFASSSNS SSFSFNAFPL QNNTNHIFTD  120
LPLSQPVTTK DESSEVVSTT PTSPNATSFS SSSNEAANDN INKEVTVKDQ EDGDQHGPKG  180
TKPQLKAKKK QQKKAREARV AFLTKSDIDN LDDGYRWRKY GQKAVKNSPY PRSYYRCTTV  240
GCGVKKRVER SSDDPSIVMT TYEGQHTHAF PMTPRGHIGM LTSPILDHGA TTASSSSSFS  300
IPQPRYLLSQ HHQPYNIMYN NNSLSMINRS SSSDGSFVNP GSSSFHGFGC DMSQASTSTT  360
AAIRDHGLLQ DILTSKIRSD TINTRTNEED NK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	204	271	10	77	Probable WRKY transcription factor 4
2lex_A	1e-27	204	271	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.162	1e-133	bud\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009129803.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430059	0.0	KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129803.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-164	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	M4DVT4	0.0	M4DVT4_BRARP; Uncharacterized protein
STRING	Bra020628.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-133	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]