PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129259.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 508aa    MW: 55704.7 Da    PI: 7.3453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH536.3e-17278325355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+ ErrRR++iN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  XP_009129259.1 278 EMHNISERRRREKINEKLKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 325
                     58*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-20273335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.52275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-14278325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-18278329No hitNo description
Gene3DG3DSA:4.10.280.101.5E-20279332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-18281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGEDDIVELL WKSGHLVRNS QAQRPSPPPV LRGSGSGSGG GGGEESAPLP LPLPHSQPSD  60
ENILASWLNH HPPPGEDELN YHLFYSGLVS TPFTQPQGSV SLTPRPPPQP PPPPPPASFI  120
MFTPTAAERP MGQFIAGRRA ESFFNFSRLR GNVHTGGRVE AAAAGAQWVK DSTQVGSSAT  180
PTSSAPESCL TPPTFTGGVA QTFAVPSLTR KVVETVCEIA GPSSSSTDTE QVQIQPATET  240
EAADERKRKE REEAVDDTEE TGEEARGSTS RKRSRAAEMH NISERRRREK INEKLKALQE  300
LIPRCNKTDK ASMLEDAIEY VKSLQLQIQM MSTGGMMPMM YAPNMQRFIA PSAMGMNRPP  360
FIPFPGMALP RQVHMVGLGP PYPPQRYPFT NVQGFDPSSV HLPAQQPDPN QPQFPGYMNP  420
YSQFVGLQQM QQPPHPTQLQ NQSQVSFSQA SSSKEPEDQD NKPIGKRGRG QRHFLRDELM  480
FTILADPFPS RCCRLKKKES AIQANAQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270287RKRSRAAEMHNISERRRR
2283288ERRRRE
3284289RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129259.10.0PREDICTED: putative transcription factor bHLH056
SwissprotQ9SVU71e-129BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A398ARK70.0A0A398ARK7_BRACM; Uncharacterized protein (Fragment)
STRINGBo1g017080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-95bHLH family protein