PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009129145.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 376aa MW: 42862.4 Da PI: 6.3816

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009129145.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.6	6.1e-50	54	179	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_009129145.1 54 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSET 147 79*************************.89***********888889************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg++++W+m+eyrl XP_009129145.1 148 YRPIGLKKTLVFYSGKAPKGTRSSWIMNEYRL 179 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.534	53	200	IPR003441	NAC domain
SuperFamily	SSF101941	9.15E-56	53	200	IPR003441	NAC domain
Pfam	PF02365	6.6E-25	55	179	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MAIVPSTTSI ITMMSNQVNN NNEKGIEEDA HRGGHESRLQ NDDEADDHDQ DMVMPGFRFH 60 PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA MAAIGEKEWY FYVPRDRKYR 120 NGDRPNRVTT SGYWKATGAD RMIRSETYRP IGLKKTLVFY SGKAPKGTRS SWIMNEYRLP 180 HHETEKYQKA ETSLCRVYKR PGVEDHPSLP RSTSTRLHNH NSSSSSRLAV RQQQQHLPSS 240 SNHSDNNLNN NNLDKLSTEY SGDGSTITTT NSNSDVTIAL ANQNIYRPMP FDASNTPIIS 300 NQEDDETAIV DDLQRLVNYS QISGGATTAA LTPQTQATLA MNTIPAGTIP NNALWEMWNP 360 LVPDGNKDHY TNIPYR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MAIVPSTTSI ITMMSNQVNN NNEKGIEEDA HRGGHESRLQ NDDEADDHDQ DMVMPGFRFH  60
PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA MAAIGEKEWY FYVPRDRKYR  120
NGDRPNRVTT SGYWKATGAD RMIRSETYRP IGLKKTLVFY SGKAPKGTRS SWIMNEYRLP  180
HHETEKYQKA ETSLCRVYKR PGVEDHPSLP RSTSTRLHNH NSSSSSRLAV RQQQQHLPSS  240
SNHSDNNLNN NNLDKLSTEY SGDGSTITTT NSNSDVTIAL ANQNIYRPMP FDASNTPIIS  300
NQEDDETAIV DDLQRLVNYS QISGGATTAA LTPQTQATLA MNTIPAGTIP NNALWEMWNP  360
LVPDGNKDHY TNIPYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	44	200	8	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	44	200	8	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	44	200	8	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	44	200	8	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-56	44	200	8	165	NAC domain-containing protein 19
4dul_B	1e-56	44	200	8	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269\|PubMed:17653269}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009129145.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129145.1	0.0	PREDICTED: NAC domain-containing protein 35 isoform X2
Refseq	XP_013692017.1	0.0	NAC domain-containing protein 35-like isoform X2
Swissprot	Q9ZVP8	0.0	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A398AEA4	0.0	A0A398AEA4_BRACM; Uncharacterized protein
STRING	Bo2g136280.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	0.0	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]