PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129095.1
Common NameWRKY3
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 475aa    MW: 51915.5 Da    PI: 7.9423
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.8e-34224280259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct + Cpvkkkvers  d++v+ei+Y+g+Hnhe
  XP_009129095.1 224 DDGYNWRKYGQKQVKGSDFPRSYYKCTNPACPVKKKVERSV-DGQVTEIIYKGQHNHE 280
                     8****************************************.***************8 PP
2WRKY106.81.1e-33378436159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  XP_009129095.1 378 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVITTYEGKHNHD 436
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29217282IPR003657WRKY domain
PROSITE profilePS5081124.524218282IPR003657WRKY domain
SuperFamilySSF1182901.28E-25221282IPR003657WRKY domain
SMARTSM007741.1E-36223281IPR003657WRKY domain
PfamPF031061.3E-25224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-37363438IPR003657WRKY domain
SuperFamilySSF1182905.62E-30370438IPR003657WRKY domain
PROSITE profilePS5081138.102373438IPR003657WRKY domain
SMARTSM007743.4E-39378437IPR003657WRKY domain
PfamPF031062.0E-26379436IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAENEEEQQK QSLTSKSSTG GASRPTISLP PRPFGEMFYS GGVGFSGFSP GPMTLVSNMF  60
SDPDEFKSFS QLVAGAMASP AAAAVVAGAH QTPVSSVGGG GDSLLDPRFK QNRPTGLMIT  120
QPPGMFTVPP GLSPATLLDS PSFFGLFSPI QGSFGMTHQQ ALAQVTAQAV QGNSIQMQSE  180
SSTQQQTLLT EVPSLPAPAQ RDDSEVSVYE HRSRPQNAAD KPADDGYNWR KYGQKQVKGS  240
DFPRSYYKCT NPACPVKKKV ERSVDGQVTE IIYKGQHNHE PPQNNKRGRD NNGSCSSLNK  300
TKRDQETSQV TITEQMSEAS DSEEVGNAET SLGGTHEDEP DPKRRNTEVR VSEPVSSSHN  360
TVTEPRIIVQ TRSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAN  420
DPKAVITTYE GKHNHDIPAS RTSSHQLRPN NNLSTVNLNQ QQTVARLRLK EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-44224439878Probable WRKY transcription factor 4
2lex_A5e-44224439878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.165242e-69flower| seed| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129095.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300270.0KF430027.1 Brassica rapa WRKY transcription factor 3 (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288910.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLM4ECP40.0M4ECP4_BRARP; Uncharacterized protein
TrEMBLV5RGZ40.0V5RGZ4_BRACM; WRKY transcription factor 3
STRINGBra026554.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tang J, et al.
    Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis).
    BMC Plant Biol., 2013. 13: p. 188
    [PMID:24267479]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]