PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009129079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CPP | ||||||||
Protein Properties | Length: 583aa MW: 62066.6 Da PI: 8.3236 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.8 | 1.2e-14 | 128 | 167 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ + XP_009129079.1 128 QKKKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCFNNVD 167 589**************************.********986 PP | |||||||
2 | TCR | 51 | 2.8e-16 | 213 | 251 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC+Ckks ClkkYCeCf+a+ Cse+C+C dCkN XP_009129079.1 213 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNF 251 589***********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.0E-16 | 128 | 168 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.136 | 129 | 253 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.3E-11 | 130 | 165 | IPR005172 | CRC domain |
SMART | SM01114 | 5.3E-19 | 213 | 254 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 216 | 251 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MGEGGGGGGE FPPKKEGVTD ESGFPAKTPA RQLDFTGGSA EHSLSKPAPP TVVATVVKTI 60 ATPSVSSSPI TTTMASRLHP VVRPTVPVVA TNSPSQSQIV NAPIRHPKPE SPISRARPIV 120 EGRDGTPQKK KQCNCKHSRC LKLYCECFAS GTYCDGCNCV NCFNNVDNEP ARRDAVEATL 180 ERNPNAFRPK IASSPHGVRD KREEIGEVVL LGKHNKGCHC KKSGCLKKYC ECFQANILCS 240 ENCRCLDCKN FDGSEERQAL FHGEHANNMA YLQQAANAAI TGAVGSSGFA PSPAPKRRKG 300 HDISFNQATK DSSTHRLGQF QQGNNGRTSG PTSGTSPATV SRPGGTSSAA PSKFVYRSLL 360 ADIIQPQDVK ALCSVLVAVA GEAAKTLTDK RNETETCLAS SAQDNSQGNK DVEMVAADAN 420 QADKSGPEGS NSDASKGNPL SPATLALMCD EQDTIFMVAA AEPNGSVDPG GCGKNSQEQS 480 EIYAEKERVV LTKFRDCLSR LISYAEIKES KCSYLARRHI QPPPTASATV KTENGIQQIP 540 EPRTTAQPTL TKPQPLQPTT TTNTSTTQHP HKPQALPEKK DST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-31 | 130 | 262 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-31 | 130 | 262 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009129079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118658 | 0.0 | AK118658.1 Arabidopsis thaliana At4g29000 mRNA for putative transcription factor, complete cds, clone: RAFL19-93-A20. | |||
GenBank | BT005931 | 0.0 | BT005931.1 Arabidopsis thaliana At4g29000 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129079.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A398AQR2 | 0.0 | A0A398AQR2_BRACM; Uncharacterized protein | ||||
STRING | Bo1g016960.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |