PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128996.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 402aa    MW: 44244.3 Da    PI: 6.34
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000532632981555
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  XP_009128996.1 263 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 298
                     5556788888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-5258302No hitNo description
SuperFamilySSF474595.89E-10258309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-7263305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNRGVLESSP VQQLMAPGNP NWWNVSGSMR PPQPLMGHQH GPLPPQMAPN NYVRPQMMPT  60
LLPPFMPYPA TSSSPSLPNN PNLSSWLESN DLPPESWSLS QLLLGGLMMG EDERLEMMKH  120
HNHHVEQQHH NFQGKMGLEN WEEQVLSHQQ ASMGVDDIKQ ESNINNSNGY LTPSPNSPPN  180
KSCVSTITTT SLNSNDDNNN NNNNSMLDFS SIHNGLNLSE GKHIPPDRSS ECNSLEIGGS  240
TNKKPRLQPS PSSQSTLKVR KEKLGGRIAA LHQLVSPFGK TDTASVLSEA IGYIRFLQSQ  300
IEALSHPYFG TTASGNMRHQ QLLQGDRNCL FPEDPGQLLN DQCMKRQEAS FSSTETQNAN  360
EEPKKDLRSR GLCLVPISCT LQVGSDNGAD YWAPALGSAG FH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886340.0AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0813160.0AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBankBT0001210.0BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128996.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLM4D3M90.0M4D3M9_BRARP; Uncharacterized protein
STRINGBra011083.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]