PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128990.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 387aa    MW: 44216.8 Da    PI: 7.6115
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.91.7e-25286369186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev+aLi+ r+e+ee+ +    k++ W+e+s +m+ rg+ers+k+Ckekwen+nk+yk++ e++kk+ +e+++t +yf++le
  XP_009128990.1 286 RWPQEEVQALIASRSEVEEKTGVV-HKGAIWDEISTRMKGRGYERSAKKCKEKWENMNKYYKRVMESSKKQ-PEHTKTRSYFEKLE 369
                     8********************998.89******************************************95.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.1E-4283344IPR001005SANT/Myb domain
PfamPF138372.0E-19285370No hitNo description
SuperFamilySSF466899.6E-5285354IPR009057Homeodomain-like
CDDcd122037.81E-23285348No hitNo description
PROSITE profilePS500907.457286342IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.3E-5286342IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQG NDDALATLAD LAPPPQKLKP  60
IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDFDAPLG SKIADVEESG LLTRGVGKGL  120
RFETEVQGQI HGTSRDGVSL SPSFDSDSEG DSSQGVGKAV TGKRKRQSRE KREHFMEKLV  180
GKMMRRQEKL HNQLINVMEK MERERVRSEE AWRQQEMDRM KQNEEARREE MSRSSTLISF  240
IKSVIGEEIK IPNAFVHAQP LQTIPRQCEW DQTQGDVKFV FPGGRRWPQE EVQALIASRS  300
EVEEKTGVVH KGAIWDEIST RMKGRGYERS AKKCKEKWEN MNKYYKRVME SSKKQPEHTK  360
TRSYFEKLES FYKTNSVSAE HSGEKEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.148900.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128990.10.0PREDICTED: trihelix transcription factor GTL1
TrEMBLA0A398AGH70.0A0A398AGH7_BRACM; Uncharacterized protein
TrEMBLM4E0520.0M4E052_BRARP; Uncharacterized protein
STRINGBra022149.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-144Trihelix family protein