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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009128925.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 500aa MW: 54965.8 Da PI: 7.3138 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009128925.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 112.5 | 4.6e-35 | 47 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77
lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+
XP_009128925.1 47 LPAGVKFDPTDQELI-EHLEAKVLVKEMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnsmh 139
799************.99*****99995443233444334666646**********.555666799******************87999999999 PP
NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l
XP_009128925.1 140 gsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195
987666788************.999***********5547999999*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 500 aa
Download sequence Send
to blast |
MNKSNPAGSV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPNWVGLPAG VKFDPTDQEL 60 IEHLEAKVLV KEMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDNSMHG SSSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN 180 RKPEKTNWVM HQYHLGTHEE EREGELVVSK ISYQTQPRQC NWSSSTSSLN AIGGGGGEAN 240 SGGGGEANKM RRGSGTTSGG SCSSSREIMN VNPTNRSDEV GGVGGGAMAV AAAAAAVVAG 300 LPSYAMDQLS FLPFMKSFDE VARRETLHTG QATCDDVMAE QLRHRHQASP SSTSSHHVAH 360 HHHQHHHQQQ QRYHAFNISQ PTHPISTIIS PSTSLHHAPV NILDDNPYRV HRILLPNENY 420 QAHQQQQDQE RDEQHNDGKM GGRSASGLEE LIMGCSSSNT HHDVKDGSSS MGNQQEAEWL 480 KYSTTFWPAP DSSDNQDHHG
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL161574 | 0.0 | AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70. |
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |