PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128925.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 500aa    MW: 54965.8 Da    PI: 7.3138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.54.6e-35471951128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 
                     lp+G++F+Ptd+el+ e+L++kv  k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          
  XP_009128925.1  47 LPAGVKFDPTDQELI-EHLEAKVLVKEMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnsmh 139
                     799************.99*****99995443233444334666646**********.555666799******************87999999999 PP

             NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_009128925.1 140 gsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195
                     987666788************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3743214IPR003441NAC domain
PROSITE profilePS5100532.23647214IPR003441NAC domain
PfamPF023651.8E-1548195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MNKSNPAGSV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPNWVGLPAG VKFDPTDQEL  60
IEHLEAKVLV KEMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDNSMHG SSSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGTHEE EREGELVVSK ISYQTQPRQC NWSSSTSSLN AIGGGGGEAN  240
SGGGGEANKM RRGSGTTSGG SCSSSREIMN VNPTNRSDEV GGVGGGAMAV AAAAAAVVAG  300
LPSYAMDQLS FLPFMKSFDE VARRETLHTG QATCDDVMAE QLRHRHQASP SSTSSHHVAH  360
HHHQHHHQQQ QRYHAFNISQ PTHPISTIIS PSTSLHHAPV NILDDNPYRV HRILLPNENY  420
QAHQQQQDQE RDEQHNDGKM GGRSASGLEE LIMGCSSSNT HHDVKDGSSS MGNQQEAEWL  480
KYSTTFWPAP DSSDNQDHHG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615740.0AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128925.10.0PREDICTED: uncharacterized protein LOC103853758 isoform X2
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3P5Z2Q00.0A0A3P5Z2Q0_BRACM; Uncharacterized protein
STRINGBo1g016630.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]