PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009128352.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 346aa MW: 38695.6 Da PI: 8.4857

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009128352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_009128352.1 34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLSHLKSHLQKFRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-31	31	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.591	31	91	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-16	33	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-24	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-8	36	86	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-21	129	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MFHAKKPSRM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDKA 60 TPKTIMRVMG VKGLTLSHLK SHLQKFRLGK QPHKEYGDHS TKEGSRASAM DIQRNVASSS 120 GMMSRNMNEM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ SILERACQTL AGENMAAASG 180 GGFKGNLGSS SLSAAMGPHP LSFPPFQDLN IYGNTTDQVL DHHNFHNQNI ENHYTANNAA 240 DTNIYLGKKR PNPSFGNDIR KELLMWSNQD HEPIDDEHRI QIQMATHVST DLDSLSEIYD 300 RKPGLSGDEG NDCGKLLERS SPRRSPLSPM MNPNAGLVQG RNSPFE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MFHAKKPSRM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDKA  60
TPKTIMRVMG VKGLTLSHLK SHLQKFRLGK QPHKEYGDHS TKEGSRASAM DIQRNVASSS  120
GMMSRNMNEM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ SILERACQTL AGENMAAASG  180
GGFKGNLGSS SLSAAMGPHP LSFPPFQDLN IYGNTTDQVL DHHNFHNQNI ENHYTANNAA  240
DTNIYLGKKR PNPSFGNDIR KELLMWSNQD HEPIDDEHRI QIQMATHVST DLDSLSEIYD  300
RKPGLSGDEG NDCGKLLERS SPRRSPLSPM MNPNAGLVQG RNSPFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.19299	0.0	bud\| silique

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically expressed in the developing protophloem sieve elements soon after the phloem-specific cell divisions have taken place. Also found in the companion cells and metaphloem sieve elements. May not be necessary for the initial steps of protophloem differentiation. {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061}.
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots, specifically in the developing protophloem sieve elements (PubMed:14614507). Detected in phloem and/or cambium (PubMed:15923329). Expressed in the phloem tissues of various organs, including leaves and cotyledons, during vegetative growth (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:26239308}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009128352.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316719	0.0	AK316719.1 Arabidopsis thaliana AT1G79430 mRNA, complete cds, clone: RAFL09-57-C07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128352.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	Q9SAK5	0.0	APL_ARATH; Myb family transcription factor APL
TrEMBL	M4CW14	0.0	M4CW14_BRARP; Uncharacterized protein
STRING	Bra008411.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5044	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	0.0	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]