PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128310.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 292aa    MW: 31406 Da    PI: 8.6264
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822180.76.5e-5621301123
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas...aspe 91 
                     ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e++gs  s   +sp 
  XP_009128310.1   2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGSSRPvERMEIGGSPCSsnfMSPA 96 
                     5899*********************************************************************9999****99976552346777 PP

          DUF822  92 sslqsslkssalaspvesys..aspksssfpsps 123
                     ss+  +l+    +s ++  +  ++++sss  s+s
  XP_009128310.1  97 SSSFANLTPGDGQSLIPWLKhlSTTSSSSASSSS 130
                     7766555555555555544300333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.6E-513130IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WIVEPDGTTY RKGSSRPVER MEIGGSPCSS NFMSPASSSF ANLTPGDGQS LIPWLKHLST  120
TSSSSASSSS RLPNYLYIPG GSISAPVTPP LSSPTSRGMN QQINNSFFVS STPPSPTRQQ  180
IIPDSEWFSG IQLPQSVPAS PTFSLVSQNP FGFKEGGGGG GSRMWTPGQS GTCSPAIPQT  240
ADVPMSEAVV APPEFAFGSN ANGLVKAWEG ERIHEVSGSD DLELTLGNSS TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A8e-22673372439Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B8e-22673372439Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C8e-22673372439Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D8e-22673372439Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.240740.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0504308e-96AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBankAY0903318e-96AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBankCP0026848e-96CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF9K208e-96AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128310.10.0PREDICTED: BES1/BZR1 homolog protein 4
SwissprotQ9ZV881e-156BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A398ACR50.0A0A398ACR5_BRACM; Uncharacterized protein
TrEMBLM4CVY10.0M4CVY1_BRARP; Uncharacterized protein
STRINGBra008378.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-136BES1/BZR1 homolog 4