PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128255.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 267aa    MW: 30588.4 Da    PI: 4.9587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-1260103654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      + Er+RR+++N++++ Lr+++P+ +      Kl+Ka+i +  ++Y+++L
  XP_009128255.1  60 VASERKRREKLNQRLFALRSVVPNiS------KLDKASIIRDSINYLQDL 103
                     578*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.32954103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1756123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.83E-1257103No hitNo description
PfamPF000109.8E-1059103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1660122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-1460109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEDLDHEYKN YWETTMFFQN QELEFDSYKF SWPLEEAFSG SGESSSPDGA ATSPVTSKNV  60
ASERKRREKL NQRLFALRSV VPNISKLDKA SIIRDSINYL QDLIDQEKKL EAEIRELESR  120
SMLLDNPTRD YDCINNFPGN QQQDLSGINA MRSKKSRQMD YNTFGSSITR VHNHSLIEVL  180
EMTVTCMGEK TVVVCITCSK KRETMLQLCK LLESLNLNIL TTNFSSFSSR LSTTLFLQAN  240
EEEKSTVETK IQTAIAAYND PNSFTNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1359113963Transcription factor MYC2
5gnj_B2e-1359113963Transcription factor MYC2
5gnj_E2e-1359113963Transcription factor MYC2
5gnj_F2e-1359113963Transcription factor MYC2
5gnj_G2e-1359113963Transcription factor MYC2
5gnj_I2e-1359113963Transcription factor MYC2
5gnj_M2e-1359113963Transcription factor MYC2
5gnj_N2e-1359113963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267ERKRRE
26368RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128255.10.0PREDICTED: transcription factor bHLH27-like isoform X1
RefseqXP_013667788.10.0transcription factor bHLH27 isoform X1
SwissprotQ700E31e-130BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A078I0D40.0A0A078I0D4_BRANA; BnaA01g07020D protein
STRINGBo1g014720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-117bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]