PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128204.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 517aa    MW: 59555.4 Da    PI: 7.7747
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.78.7e-3026109186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ e+laL+++r+em++++r++ lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++l+
  XP_009128204.1  26 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEVSRKMKELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELQ 109
                     8********************************************************************975544..6******98 PP
2trihelix105.92.9e-33358443187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+++e +++++  ++plWee+s  mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  XP_009128204.1 358 RWPKTEVEALIRIRKNLEANYQENGTRGPLWEEISGGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFNQLEA 443
                     8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00982385IPR001005SANT/Myb domain
CDDcd122032.92E-252590No hitNo description
PROSITE profilePS500906.8642583IPR017877Myb-like domain
PfamPF138372.2E-2025111No hitNo description
SMARTSM007170.011355417IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-4357414IPR009057Homeodomain-like
PROSITE profilePS500907.387357415IPR017877Myb-like domain
PfamPF138371.0E-23357444No hitNo description
CDDcd122031.57E-25358422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGGSGEDEKD MKMEEIGEVG GGGGNRWPRP ETLALLRIRS EMDKAFRDST LKAPLWEEVS  60
RKMKELGYKR SAKKCKEKFE NVYKYHKRTK EGRTGKSEGK TYRFFEELQA LEALNSYPPE  120
PGSQPLKSST ATTTVITTTS LIPLNHHQVS VKPIATIPTF LAKQPSPTTP FPIYSNNHAT  180
TIDTGFSPTS NDLINNVSSL NLFSSSTSSS TASDEEEDHH HQDNRSRKKR KYWKGLFTKL  240
TNELMEKQEK VQKRFLETFE NQERERISRE EAWRVQEVAR INREHETLVH ERSNAVAKDA  300
VIISFLHKIS GGQQQQQQKH EVPQRKQYHS EHSITFESKE PRPVLFDSNH SLSPSSSRWP  360
KTEVEALIRI RKNLEANYQE NGTRGPLWEE ISGGMRRLGY NRSAKRCKEK WENINKYFKK  420
VKESNKKRPL DSKTCPYFNQ LEALYNERNK SGALSILPLM LTPQLLPQET QTEVKTDQGD  480
KAEEGESEED DYENEYEEGD NETSEFEILL NKSSPMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876KRSAKKCKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.250013e-62silique
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792831e-132AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBankAK2277781e-132AK227778.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-35-A17.
GenBankAY0871171e-132AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
GenBankBT0303631e-132BT030363.1 Arabidopsis thaliana At1g76890 mRNA, complete cds.
GenBankCP0026841e-132CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ1088311e-132DQ108831.1 Arabidopsis thaliana clone 27806 mRNA sequence.
GenBankX727801e-132X72780.1 A.thaliana mRNA for GT-2 factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128204.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM4CVN90.0M4CVN9_BRARP; Uncharacterized protein
STRINGBra008286.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein