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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009128110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
SRS |
| Protein Properties |
Length: 342aa MW: 38184.8 Da PI: 7.2889 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009128110.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 220.8 | 2.8e-68 | 113 | 278 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........kskkqsal 86
g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +q+a++++++a+s+ ++a++kr re +s + ++
XP_009128110.1 113 LGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQHASLQHHSATSRetQNAKAKRLREAnggdnddkdRSGGSGSA 207
6899*****************************************************99999988443334444444477777776666777888 PP
DUF702 87 sstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
+t+l++a+s++ + s+ lP+evss+a+frcvrvss+++ +e+e+aYqtav+igGhvfkGiLydqGl++
XP_009128110.1 208 LATRLVNANSNSGFGESQnLPPEVSSPAIFRCVRVSSMENdeDEQEYAYQTAVNIGGHVFKGILYDQGLDQ 278
8999999999999876655*******************98434556**********************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MAGFFYLGGR DNINNKQDHH HVDKDHHQQD KSNYLYLYKD EIYNTNKGFE IWPPQYFQQQ 60
QEQQQHHVTA STNLYSFGMV PSSSNNNNNN RSRSLYFNVV SDHEPGGFSV TRLGGMNCQD 120
CGNQAKKDCP HLRCRTCCKS RGFHCQTHVK STWVPAAKRR ERLAQHASLQ HHSATSRETQ 180
NAKAKRLREA NGGDNDDKDR SGGSGSALAT RLVNANSNSG FGESQNLPPE VSSPAIFRCV 240
RVSSMENDED EQEYAYQTAV NIGGHVFKGI LYDQGLDQDH HHQLDLLAST ATTTNAEEIA 300
AKTAVTVAAN TNNGLMIDPS SLYPYQLNSF IAGTPFFTPP RS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205267 | 0.0 | GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds. |
