PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 320aa MW: 35480.5 Da PI: 9.2781

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.7	8e-33	163	218	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF XP_009127954.1 163 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 218 9**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-38	160	221	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.879	161	221	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.8E-27	163	218	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.7E-24	164	186	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	166	186	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.7E-24	195	218	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MHQMNKKDST LPYLNTSISW GVVPAEPLSM KVVDARPEHT TKQISFQDQD SSSTQSTGQS 60 YTDIASSGDD DNPSRQIPFS TKSGSEETQH KGFTTHPKPG SMTGLPSIHF APPQANFSFH 120 YADPQFGSML AATYLPQAPA CNHQMVGMVP GRVPLPAEIT ETEPVFVNAK QYHAIMRRRQ 180 QRAKLEAQNK LIKARKPYLH ESRHVHALKR PRGSGGRFLN TKKLLQESEQ EHGKSVQQES 240 EKANMSRFEA HMLKHSKDRG STNSGSDITS LSDGADVFGH SEFQFSGFPI PTQTNQAMRV 300 HGQSNDMHGG GDLHHFSVHI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-20	163	222	3	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.12237	0.0	leaf\| root\| silique

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127954.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like
Refseq	XP_018511732.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like
Swissprot	Q93ZH2	1e-179	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A398AI52	0.0	A0A398AI52_BRACM; Uncharacterized protein
STRING	Bra008052.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-170	nuclear factor Y, subunit A3