PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

AP2

Protein Properties

Length: 443aa MW: 50010.1 Da PI: 6.7337

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.8	1.7e-15	250	309	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++gr++A+++d ++ g +r ++++lg ++ +e+Aa+a++ a+ k++g XP_009127942.1 250 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqsRRgRQVYLGGYDDEEKAARAYDLAAMKYWG 309 78*****************988886677557***********************98 PP
2	AP2	47.2	5.6e-15	352	403	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_009127942.1 352 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403 57**************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.41E-21	250	319	No hit	No description
Pfam	PF00847	2.9E-11	250	309	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.51E-17	250	319	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.4E-16	251	318	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-29	251	323	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.006	251	317	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-6	252	263	IPR001471	AP2/ERF domain
CDD	cd00018	7.03E-26	352	412	No hit	No description
Pfam	PF00847	8.4E-10	352	403	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-17	352	411	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.5E-18	353	411	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-33	353	417	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.019	353	411	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-6	393	413	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MNKWLGFSLT PHLRISDRVQ EEDEENYVVT NQQKALMPLN SDGSPFFTDP LTHHPHPVWQ 60 YDINLNHDDH HHHDEEVPKL EDFFSNSHQT ECPPISGNNQ TNVNCTTMLN RLSPPGYLLY 120 EQAVSTPQYS NLDTNLSHDY GGSVSVFKSW LGQGTPTFPV SNTYVSGEGS TSNTSNFSHE 180 ETNYNTSGST LLLTMSHGAA SDLINELNVS VPVEEPVKVD EKRKSLVGKS QAKEPVETRK 240 SVDSLGQRTS QYRGVTKHRW TGRYEAHLWD NSCKKEGQSR RGRQVYLGGY DDEEKAARAY 300 DLAAMKYWGP TTHLNFPLSN YEKEMEELNN MTRQEFVAML RRNSSGFSRG ASIYRGVTRH 360 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DICRYDVKRI 420 CSNSTIINSD QAKRSPSNSA SGQ

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MNKWLGFSLT PHLRISDRVQ EEDEENYVVT NQQKALMPLN SDGSPFFTDP LTHHPHPVWQ  60
YDINLNHDDH HHHDEEVPKL EDFFSNSHQT ECPPISGNNQ TNVNCTTMLN RLSPPGYLLY  120
EQAVSTPQYS NLDTNLSHDY GGSVSVFKSW LGQGTPTFPV SNTYVSGEGS TSNTSNFSHE  180
ETNYNTSGST LLLTMSHGAA SDLINELNVS VPVEEPVKVD EKRKSLVGKS QAKEPVETRK  240
SVDSLGQRTS QYRGVTKHRW TGRYEAHLWD NSCKKEGQSR RGRQVYLGGY DDEEKAARAY  300
DLAAMKYWGP TTHLNFPLSN YEKEMEELNN MTRQEFVAML RRNSSGFSRG ASIYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DICRYDVKRI  420
CSNSTIINSD QAKRSPSNSA SGQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269\|PubMed:15988559}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127942.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127942.2	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q1PFE1	0.0	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	A0A078IIR9	0.0	A0A078IIR9_BRANA; BnaA02g16050D protein
STRING	Bra008040.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11747	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	0.0	AP2 family protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]