PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127744.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 324aa    MW: 36741.3 Da    PI: 6.7257
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-322478155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  XP_009127744.1 24 KPRLKWTCELHQRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 78
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.4182181IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-282278IPR009057Homeodomain-like
SuperFamilySSF466891.54E-152378IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-222479IPR006447Myb domain, plants
PfamPF002491.3E-62677IPR001005SANT/Myb domain
PfamPF143791.4E-22126172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MESNTNNGNN HKAKVSLVLS TDAKPRLKWT CELHQRFIEA VNQLGGPNKA TPKGLMKAME  60
IPGLTLYHLK SHLQKYRLGK SLKFDDNKLE VSSASETQEA ESKNDSGNFR GNVNQENNDP  120
ANEGLKITEA LQLQMEVQKK LHEQIEVQRH LQVKIEAQGK YLQSVLMKAQ QTLAGYTSAS  180
LGMDFARSEL SRLASMMNPS SSFSEQTQVE DYEEEGFLWC KKPENREKRQ PRSSVESSLT  240
SSESSETKLN NNNEERKSME LPLMEIKSEA MTAKKTKRSL NDVLCVEHQP LKKRDFGVDD  300
DDEQHLRLSL NSYKQDMGTC PNMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127744.10.0PREDICTED: myb family transcription factor PHL8-like
RefseqXP_013717046.10.0myb family transcription factor PHL8-like isoform X2
SwissprotF4I2741e-163PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A398ABC90.0A0A398ABC9_BRACM; Uncharacterized protein
TrEMBLM4CUH20.0M4CUH2_BRARP; Uncharacterized protein
STRINGBra007867.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-159G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]