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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009127698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 33629.3 Da PI: 6.8661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.7e-14 | 43 | 92 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P++ +K + a+ L +++ Y+++Lq XP_009127698.1 43 RSKHSVTEQRRRSKINERFQVLRELIPNS----EQKRDTASFLLEVIGYVQYLQ 92 889*************************8....79******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-18 | 39 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.745 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-21 | 41 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.27E-13 | 43 | 96 | No hit | No description |
Pfam | PF00010 | 1.3E-11 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MRTGKGNQEE EDYGGEDDLG LKREGSSSAS RDAKDNDKAS AVRSKHSVTE QRRRSKINER 60 FQVLRELIPN SEQKRDTASF LLEVIGYVQY LQEKVQKYEG SYPGWSQEPT KLTPWRNNHW 120 RVQSLASHPV ALNNGSAPVL PFPGKFEEIT VASAHATVAE LQSPVECDKG RSIASKSVDR 180 QAELDVKGLP PLQPIHPLAH SEQVNNTECP ATSDGQGLSD GLVIESGTIS ISTVYSHELL 240 SSLTQALQKA GIDLSHAKLS VQIDLGKRAN PSNKNLLTSD TEGATRSRNL SVEGDSEHSH 300 KRMRTL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.24210 | 0.0 | flower| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009127698.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127698.1 | 0.0 | PREDICTED: transcription factor BIM2-like isoform X2 | ||||
Swissprot | Q9CAA4 | 1e-156 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | M4FB66 | 0.0 | M4FB66_BRARP; Uncharacterized protein | ||||
STRING | Bra038332.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-150 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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