PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009127691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 473aa MW: 51343.8 Da PI: 6.1972 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 5.9e-09 | 295 | 343 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009127691.1 295 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 343 58*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.47E-11 | 290 | 347 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-17 | 290 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.478 | 292 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-17 | 293 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-6 | 295 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 298 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MDVNEKEEFS GEKRNTGYDS ADNHPSDWRI SGSNPVSAPP FGSYSTENLI TASCSPSQMM 60 DSFGQTLWYD PTNVQAVGYG GFSGGHPSSS SSSCLRGNMD RSLEMGWSMP NLLPSKGNGL 120 FLPNASSFLP PSMAQFPADS GFIERAARFS LFSDMVNQPL GNPESVGLFL QGQCPSSEVN 180 VGVATTAVRD PNVRSSELVS KPNVSEDTRS SGQKGGETSS KDSKKRKRNR QNSEADQSHK 240 TEEEAENNGD KKGSDEQSPN SPGNKTNSGK QQGKQTSDPK DGYIHVRARR GQATNSHSLA 300 ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQM 360 DFNLESLLAK DVRELQLRGG SSSATPFPQN MPMVYPPLPH GFMQQTLSSI GRNITSPLSP 420 MNGGYKRQET NGWEGDLQNV IHINYGAGDV PSDPEAAATA TASLPSSNMK VEP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009127691.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127689.1 | 0.0 | PREDICTED: transcription factor bHLH49-like | ||||
Swissprot | Q9CAA9 | 0.0 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | A0A3P6A6M1 | 0.0 | A0A3P6A6M1_BRACM; Uncharacterized protein | ||||
STRING | Bo2g062450.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.2 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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