PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127689.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 473aa MW: 51343.8 Da PI: 6.1972

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	5.9e-09	295	343	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009127689.1 295 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 343 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.47E-11	290	347	No hit	No description
SuperFamily	SSF47459	2.49E-17	290	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.478	292	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-17	293	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	295	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	298	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MDVNEKEEFS GEKRNTGYDS ADNHPSDWRI SGSNPVSAPP FGSYSTENLI TASCSPSQMM 60 DSFGQTLWYD PTNVQAVGYG GFSGGHPSSS SSSCLRGNMD RSLEMGWSMP NLLPSKGNGL 120 FLPNASSFLP PSMAQFPADS GFIERAARFS LFSDMVNQPL GNPESVGLFL QGQCPSSEVN 180 VGVATTAVRD PNVRSSELVS KPNVSEDTRS SGQKGGETSS KDSKKRKRNR QNSEADQSHK 240 TEEEAENNGD KKGSDEQSPN SPGNKTNSGK QQGKQTSDPK DGYIHVRARR GQATNSHSLA 300 ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQM 360 DFNLESLLAK DVRELQLRGG SSSATPFPQN MPMVYPPLPH GFMQQTLSSI GRNITSPLSP 420 MNGGYKRQET NGWEGDLQNV IHINYGAGDV PSDPEAAATA TASLPSSNMK VEP

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MDVNEKEEFS GEKRNTGYDS ADNHPSDWRI SGSNPVSAPP FGSYSTENLI TASCSPSQMM  60
DSFGQTLWYD PTNVQAVGYG GFSGGHPSSS SSSCLRGNMD RSLEMGWSMP NLLPSKGNGL  120
FLPNASSFLP PSMAQFPADS GFIERAARFS LFSDMVNQPL GNPESVGLFL QGQCPSSEVN  180
VGVATTAVRD PNVRSSELVS KPNVSEDTRS SGQKGGETSS KDSKKRKRNR QNSEADQSHK  240
TEEEAENNGD KKGSDEQSPN SPGNKTNSGK QQGKQTSDPK DGYIHVRARR GQATNSHSLA  300
ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQM  360
DFNLESLLAK DVRELQLRGG SSSATPFPQN MPMVYPPLPH GFMQQTLSSI GRNITSPLSP  420
MNGGYKRQET NGWEGDLQNV IHINYGAGDV PSDPEAAATA TASLPSSNMK VEP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127689.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127689.1	0.0	PREDICTED: transcription factor bHLH49-like
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A3P6A6M1	0.0	A0A3P6A6M1_BRACM; Uncharacterized protein
STRING	Bo2g062450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]