PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127458.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 665aa    MW: 75666.8 Da    PI: 6.7872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21.1e-5561341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+
  XP_009127458.1   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVT 99 
                     79****************************.99***************6434555777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  XP_009127458.1 100 S-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-644156IPR003441NAC domain
PROSITE profilePS5100561.0256156IPR003441NAC domain
PfamPF023652.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKLEEQHHGM KRKKATTNSE  180
KSTSSTCLYS DGMYENLENS GYPVSPDHGL TQLGNISSSD METIENKWSH SMSHDTSYNF  240
PAQSQFCSQY GTITYPPSKA EIAFECARLK NRMLPPAPPL HVEDLAHSEH LGTNVANDTD  300
QMLSKIIALA QASHEPHNSL GSWEFASASG NFQGDVCYPG EKASGSWVEA NMKAVDMQAH  360
DGRFKEERIV ENLRWVGVSN KELEKSFIEE HSTVVPIEDI WSYRTDSHEH QDGEGVNNNG  420
DVDDVYTLEF SENELNANNS DKINNNDHDA TSSPRFEMVN KVEVSHGLSV TTRQVTNTCF  480
QQIVPSQTVI VYINPTGTVN CGHEKKLTEE VHVVKQINPR IDSFVSKILG PWRRFAYXIG  540
FVHILLLIYC ANQGGNSNEN QRSEGDCNDR GKILNTKCCS EKNIWKKKNE KNIVDEKVFS  600
VQDSFMLKKL GLSVAVTLTV STICLIFNVK FNMDLHFFYC TTDYMSRRAF LSFAFFFTFS  660
FFYTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-56116215174NAC domain-containing protein 19
3swm_B2e-56116215174NAC domain-containing protein 19
3swm_C2e-56116215174NAC domain-containing protein 19
3swm_D2e-56116215174NAC domain-containing protein 19
3swp_A2e-56116215174NAC domain-containing protein 19
3swp_B2e-56116215174NAC domain-containing protein 19
3swp_C2e-56116215174NAC domain-containing protein 19
3swp_D2e-56116215174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026842e-80CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P192e-80AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127458.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86
TrEMBLA0A398AFW60.0A0A398AFW6_BRACM; Uncharacterized protein
TrEMBLM4FF730.0M4FF73_BRARP; Uncharacterized protein
STRINGBra039745.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28