PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127096.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 588aa MW: 64204.4 Da PI: 5.5399

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C + F++ L H+r+H XP_009127096.1 9 HICDTCRRQFPTLKALYGHQRVH 31 68*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.6E-6	7	37	No hit	No description
Pfam	PF13912	6.1E-6	8	31	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.092	9	36	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-4	9	35	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MMNNNNIVHI CDTCRRQFPT LKALYGHQRV HTRERELERQ LKRTKPSYPP GQGTSYGFSP 60 GTPLVTHNHN HPTFSNFNRP GISFGPFKSG GGGNSRGYPL FNHGNTMAPP ANPYRSLTQN 120 TSYGSSSRVP LPSFRYNNSL GSANSIGRFS NNNSSQGELS LELSLGPSKS MGDSNSNSSS 180 QGSLSLELSL GPSKSMSGNN NNSSAYASLN CGVTGGGNMY TNMPVRPRVP GYHFYRNNPI 240 DSITRNVPLS HPPPTTNTMN RLVRPRASRF HFHGHNPLDS IIRNVPLSQP PPTINIPDDN 300 NVSGTSLIVK EKDKTVVLDD DEKDDVVIVD HDEDQQEEVE AKSCGRDSII RNVPLSQPPP 360 TTNMNKLVRP RASRFHFHGH NPLDSIIQNV PLSQPHPTTN IPDDNNVSGT SLIVKEKGTT 420 VVLADDEKDN VVIVDHDEGQ QEEVEAKSCG RGSIISNVPL SHPPSPTNPP DDNNVSGSSL 480 IANEKDKTVV LEDDEKDNVV IVDHGEDQQE EVEAKSCGRD SFISNVPLSQ PPSTTNLPDD 540 NNVSGSSLIT KEKDKTVVLD DDETDNVGIL DHDEDQQEEV EAKSCGRD

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MMNNNNIVHI CDTCRRQFPT LKALYGHQRV HTRERELERQ LKRTKPSYPP GQGTSYGFSP  60
GTPLVTHNHN HPTFSNFNRP GISFGPFKSG GGGNSRGYPL FNHGNTMAPP ANPYRSLTQN  120
TSYGSSSRVP LPSFRYNNSL GSANSIGRFS NNNSSQGELS LELSLGPSKS MGDSNSNSSS  180
QGSLSLELSL GPSKSMSGNN NNSSAYASLN CGVTGGGNMY TNMPVRPRVP GYHFYRNNPI  240
DSITRNVPLS HPPPTTNTMN RLVRPRASRF HFHGHNPLDS IIRNVPLSQP PPTINIPDDN  300
NVSGTSLIVK EKDKTVVLDD DEKDDVVIVD HDEDQQEEVE AKSCGRDSII RNVPLSQPPP  360
TTNMNKLVRP RASRFHFHGH NPLDSIIQNV PLSQPHPTTN IPDDNNVSGT SLIVKEKGTT  420
VVLADDEKDN VVIVDHDEGQ QEEVEAKSCG RGSIISNVPL SHPPSPTNPP DDNNVSGSSL  480
IANEKDKTVV LEDDEKDNVV IVDHGEDQQE EVEAKSCGRD SFISNVPLSQ PPSTTNLPDD  540
NNVSGSSLIT KEKDKTVVLD DDETDNVGIL DHDEDQQEEV EAKSCGRD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127096.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127096.1	0.0	PREDICTED: uncharacterized protein LOC103851971
TrEMBL	M4E1R2	0.0	M4E1R2_BRARP; Uncharacterized protein
STRING	Bra022712.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23552	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	6e-15	C2H2 family protein