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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009127041.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 542aa MW: 60958 Da PI: 6.7609 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009127041.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W + Ede l+ +v++ G g+W++ + g++R++k+c++rw ++l
XP_009127041.1 27 KGPWMAAEDEMLASYVRENGEGNWNSLQKNTGLTRCGKSCRLRWANHL 74
79******************************************9986 PP
|
| 2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T +E+ +++++++qlG++ W++ a+ ++ gRt++++k++w++
XP_009127041.1 80 KGSFTDDEEHIIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNM 123
799*******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 542 aa
Download sequence Send
to blast |
MVMYGGGAWK DGESNNHISD GGVALKKGPW MAAEDEMLAS YVRENGEGNW NSLQKNTGLT 60
RCGKSCRLRW ANHLRPNLKK GSFTDDEEHI IIQLHAQLGN KWARMAAQLP GRTDNEIKNY 120
WNMRLKRLQR QGLPLYPPDI ILYHQLHKHN HYHDQQHQHN QMYFQPQSSE PSTPSSSPLP 180
SPTPVNANAS SSFTFQTTNA STANLLHPLS SHTPTTPPQS PFSSPFSSPQ NNQYTTLPVF 240
SLPCSQNVNF TFPRTPPLLQ PPSSFLDKRY NNANTSLNCI NRVSTAPFSL FTRESYTSFL 300
TLPYSSPTAQ NATYYNTNNI YSSSPSFSLN PSPSSYPTTS SSSPSFLHSY YTPNSSSTSF 360
HTNTTYSMKQ ELPSNQTLQI CAFNNVNNFT DNEKHNSTGF HRRSISCSLL EDVLKEAEAL 420
EDISVDRPPK RRQLTASPPK NHNNNGDFFS VSFGQYGSSE NTCSLQDLKS KEEVSLQMNT 480
MQEDVAKFFD WESNSGEILN GQSSVVTDDN LVLDVHQFES LAANYEQNNN NNCSWDDLHE 540
IR
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Accumulates in the pollen tube nucleus during pollen tube growth through the pistil. {ECO:0000269|PubMed:23791732}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in pollen grains and pollen tube (PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}. |
