PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126798.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 293aa    MW: 31212 Da    PI: 6.5252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12108153555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  XP_009126798.1 108 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 153
                     99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.62E-12101157No hitNo description
SuperFamilySSF474597.2E-17101162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16105162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9108153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGNENVERKG EFINQNNNDF FLDSMSMLSS LPPCWDSSLP PPHPPPPHAL TVDASFPDQF  60
HQPQESGGPT IGSQDGLQGQ GTVSTTSAPV ARQKPRVRAR RGQATDPHSI AERLRRERIA  120
ERMKSLQELV PNTNKTDKAS MLDEIIEYVR FLQLQVKVLS MSRLGGAGAV GPRLNGLTSE  180
VGGRLNALSG PCNGLNGKGN ATGSSNESLR STENRVAKLM EEDMGSAMQY LQGKGLCLMP  240
ISLATAMSSS SNNSRGALFN PKSNVLAAEE ANVAAVAPPE DSSPMDDVSA SKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126798.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126798.10.0PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ31e-174BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A398A8E30.0A0A398A8E3_BRACM; Uncharacterized protein
STRINGBra020398.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-137LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]