PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126707.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 306aa    MW: 35634.4 Da    PI: 4.7237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.44.9e-18261804128
             NAM   4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra....tksg 81 
                     G+ F+P+d+el++++L +k+e+         e+e++i   ++y+ ePw L++ +++   +++ew++F++r + +     +g++++r      + g
  XP_009126707.1  26 GIYFDPEDHELIKYHLLPKLETYLqpkskdEECEDFIVMKNVYDKEPWLLDH-TNHplfKKNEWFYFVTRTQVSVknigRGRNSKRRiagdNDGG 119
                     99*****************987554455545566689999**********84.222345889*****999988773333344444433343449* PP

             NAM  82 yWkatgkdkevlsk..kgelvglkktLvfy.............kgrapkgektdWvmheyrl 128
                      Wk   k k + ++  k++ +g k+tL f              +  a  g+ ++W+m ey+l
  XP_009126707.1 120 SWKPNAK-KYIEDEerKKTIIGKKQTLKFTksdnnkrqkrgdgTSAAVPGSTSSWIMYEYSL 180
                     ***9877.667666446667**********66665554433322456667799*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.80823197IPR003441NAC domain
SuperFamilySSF1019414.97E-2324195IPR003441NAC domain
PfamPF023651.7E-1426180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSNNYEDGGV YYDPDETMFN NDEDGGIYFD PEDHELIKYH LLPKLETYLQ PKSKDEECED  60
FIVMKNVYDK EPWLLDHTNH PLFKKNEWFY FVTRTQVSVK NIGRGRNSKR RIAGDNDGGS  120
WKPNAKKYIE DEERKKTIIG KKQTLKFTKS DNNKRQKRGD GTSAAVPGST SSWIMYEYSL  180
PDENTFQELV LCKIRKISNS KDEEVEAVDV THDAEDGTGE LVERFARTGL DDQQTTEKYD  240
QQEPPMYAQT QSSDPSARLG DKSIPIEVDD DEDEEQVMNQ ELEKHLFKST ESLVFMYKHK  300
KCKHSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133156RKKTIIGKKQTLKFTKSDNNKRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126707.10.0PREDICTED: NAC domain-containing protein 6-like
TrEMBLM4DUY40.0M4DUY4_BRARP; Uncharacterized protein
STRINGBra020327.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.13e-15NAC domain containing protein 88