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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009126657.1 | ||||||||
Common Name | ZCHP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 159aa MW: 17104 Da PI: 9.9738 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H XP_009126657.1 80 HPCPICGVEFPMGQALGGHMRKH 102 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 13 | 35 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 37 | 59 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.3E-7 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.51E-5 | 79 | 106 | No hit | No description |
Pfam | PF13912 | 4.0E-11 | 80 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.067 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MVAEIKSTVE ATAANCLMLL SRVGQENGGD TKRVFTCKTC TCLKEFQSFQ ALGGHRASHK 60 KPNNENLSGL IKKAKTPSSH PCPICGVEFP MGQALGGHMR KHRNENGGGV ALVTRALLPE 120 PTVTTLKKTS SGKRVACLDL ILGMVENLNL KLELGRTVY |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009126657.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288817.1 | 1e-107 | zinc finger protein ZAT12 | ||||
Swissprot | Q42410 | 7e-91 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A078F823 | 1e-105 | A0A078F823_BRANA; BnaA02g06780D protein | ||||
TrEMBL | E2IPA6 | 1e-105 | E2IPA6_BRACM; C2H2 type zinc finger protein | ||||
STRING | Bo2g025350.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 3e-93 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 103249160 |