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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009126622.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
AP2 |
| Protein Properties |
Length: 430aa MW: 47336.9 Da PI: 8.3327 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009126622.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.4 | 6.3e-17 | 118 | 167 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
XP_009126622.1 118 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 167
78*******************......55***********************9997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 430 aa
Download sequence Send
to blast |
MMLDLNLDVV SAESTQMDES VTSNSSVVNA EASSCIDGEE ELCSTRAAVK FQFEILKGRG 60
GEEEEEDRKT KEFFPVAQSS RSSVDISFQR GTQGGDFVQP PPAQPVKKSR RGPRSKSSQY 120
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAVKFRGLEA DINFIISDYE 180
EDLKQMANLS KEEVVQVLRR QSSGFSRSNS RYQGVALQKN GGWGAQMKQF NGNMAVASLI 240
EPHASRIIPE AANVKLDLSL GISISLGDGP KQKDKAPRLH HPPNSMMDNH MAAATCDTPF 300
NLLKRASDHL INRHVLHPSA FFSPMERTPE KGFMSPSPQS YLARTWQAQD QFSGGTATAA 360
IASPLYSNAA SSGFSPSATR PPPSSTASAT LHPSQPFFNL NMPSLYVIHP SDYASQQQHH 420
HLMNRSQPPP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC234737 | 0.0 | AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence. |
