PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009126547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 284aa MW: 32620.9 Da PI: 6.506 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 63.7 | 3.1e-20 | 110 | 169 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg+ WrKYGqK++k+s++ rsYYrC+++ C +kk+ ++ +++p v +tY g+H+++ XP_009126547.1 110 DGFLWRKYGQKTIKQSKHQRSYYRCSYNidyACGAKKHEQKIKDNPPVYRTTYFGHHTCR 169 9**************************99999*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.028 | 103 | 171 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.7E-20 | 105 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-20 | 107 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-28 | 108 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-20 | 110 | 169 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MNTSHEKAVQ AILYGHSCAK RLKLQLDHPV ADARSVSNYD LTKSIVHCFS DAISIFSDKS 60 KSEDDVFSDL SSRDYPPPLH QRSHSKKRKN NSTNSSENWR HDSPDPNYYD GFLWRKYGQK 120 TIKQSKHQRS YYRCSYNIDY ACGAKKHEQK IKDNPPVYRT TYFGHHTCRI NQNQDAGFTT 180 IGDPVDNLEN SRMIRFGQDL DQETIGLSVS VKDEKGIIKE ETMDQCRGIT GNDKDCQTVI 240 KENHQSSPSG SYTPSSSGSE IDMFDSDLLV EDLDLWDRYD LYDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-16 | 110 | 169 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | QRSHSKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009126547.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126547.1 | 0.0 | PREDICTED: probable WRKY transcription factor 38 | ||||
Swissprot | Q8GWF1 | 1e-114 | WRK38_ARATH; Probable WRKY transcription factor 38 | ||||
TrEMBL | A0A078K268 | 0.0 | A0A078K268_BRANA; BnaAnng39080D protein | ||||
TrEMBL | M4DUK3 | 0.0 | M4DUK3_BRARP; Uncharacterized protein | ||||
STRING | Bra020196.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13673 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 1e-103 | WRKY DNA-binding protein 38 |
Publications ? help Back to Top | |||
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