PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126177.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 705aa    MW: 79599.2 Da    PI: 6.6347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182879556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++ +q+++Le++F+++++p+ ++r +L ++l+L+ +q+k+WFqN+R++ k
  XP_009126177.1 28 HRHSVHQIQRLEAYFKECPHPDDTQRHKLGEELKLKPKQIKFWFQNKRTQAK 79
                    57899********************************************988 PP
2START128.39e-412244424206
                     HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                       a +e ++++  eep+W kss       ++en++++ ++++  k+   ++e +++++vv m++ +lv  ++d+  +W + +     +a+t+ v+
  XP_009126177.1 224 VNAVTEIIRLIHIEEPMWIKSSiddrlviDQENYEKSFTNISHLKSpsARIESSKDVVVVHMDARNLVDMFFDTE-KWARIFStivnEAKTIHVL 317
                     6788999**********************************88888999**************************.**99999999999999998 PP

                     CTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
           START  86 ssg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                     +s      ++ qlm+ +l  lsplvp R+f ++R+++q +++ wvi+dvS  + +   e   +  + ++pSg+li+ ++ng skvtw+ehv++++
  XP_009126177.1 318 ESMdtqrqNFSQLMYEQLHILSPLVPpREFIILRCCQQIEDDLWVIADVSCHHVNIDFE---SPTCSKRPSGCLIQALPNGLSKVTWMEHVEVNE 409
                     887788**********************************************9998764...566888*************************** PP

                     SXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 175 rlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++  h ++r l+  g   ga++w+ tl+r ce+
  XP_009126177.1 410 KVRtHRIYRDLLCGGFGYGARRWTVTLERMCER 442
                     **99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-16681IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-181083IPR009057Homeodomain-like
PROSITE profilePS5007115.4832181IPR001356Homeobox domain
SMARTSM003891.3E-142385IPR001356Homeobox domain
PfamPF000467.7E-162879IPR001356Homeobox domain
CDDcd000867.33E-152882No hitNo description
PROSITE profilePS5084839.722212445IPR002913START domain
SuperFamilySSF559618.79E-29213443No hitNo description
CDDcd088755.44E-93216441No hitNo description
SMARTSM002341.0E-24221442IPR002913START domain
PfamPF018521.5E-33224442IPR002913START domain
Gene3DG3DSA:3.30.530.206.2E-9263408IPR023393START-like domain
SuperFamilySSF559611.35E-10465669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDSNHDSSSS NGLETSMSTT NRDNKIYHRH SVHQIQRLEA YFKECPHPDD TQRHKLGEEL  60
KLKPKQIKFW FQNKRTQAKA QSEKVFNASL RAENIRIRRE NEVIQEALKT VTCPPCGGPR  120
PGKEERKLYL QKMRAHNTYL KRQLEQISDF VNNNGGHSIP SVNSLASTSS NPHFSYGTSS  180
NRPLEPPSLE REQYTHEHIN NAQPTQHFQP LSQMEKMMMS QTMVNAVTEI IRLIHIEEPM  240
WIKSSIDDRL VIDQENYEKS FTNISHLKSP SARIESSKDV VVVHMDARNL VDMFFDTEKW  300
ARIFSTIVNE AKTIHVLESM DTQRQNFSQL MYEQLHILSP LVPPREFIIL RCCQQIEDDL  360
WVIADVSCHH VNIDFESPTC SKRPSGCLIQ ALPNGLSKVT WMEHVEVNEK VRTHRIYRDL  420
LCGGFGYGAR RWTVTLERMC ERLHLSSISV FPTTDFAGVV ETIEGRRSVM NLGERMLKNF  480
AWILKMSGNY DFSQLSETNS SGVRVSVRVN SEAGQPTGLI VCAASSICLP LSPLEVYNFL  540
TNLEIRHQWD VLCHGYPAAE VAGFATGTDD KNRVNILQTA STAEDADMMI IQDSFRDALG  600
GMVVYAPVDL NTASAAVSGQ VNPSGIPILP SGFIISRDGH HFTSPELEDG SDYSKSLLTV  660
AFQILVSGPT LSGDLQIEES TTTVNTLITS TLQRIKVMLN CNEGK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126177.10.0PREDICTED: homeobox-leucine zipper protein HDG9-like
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLM4E4A80.0M4E4A8_BRARP; Uncharacterized protein
STRINGBra023611.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]