PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 188aa MW: 21921.1 Da PI: 6.3941

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009126070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.7	6e-14	73	129	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++L ++l++ ++ + + XP_009126070.1 73 DRKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENQQLLDKLNQASDSNDLVL 129 689*******************************************99888776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-12	70	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	72	120	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.5E-11	73	125	No hit	No description
Pfam	PF00170	6.0E-12	73	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-13	74	123	No hit	No description
CDD	cd14702	1.08E-18	75	122	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MQPNYDSSSL NSMQQQDYFH LNHYYNNLNP STNINNLNLI PYPQIHQEFN LQSPGNNSTT 60 SDEATEDIFV INDRKQRRMV SNRESARRSR MRKQRHLDEL LSQVAWLRSE NQQLLDKLNQ 120 ASDSNDLVLQ ENLRLKEENV ELRQVITSMK KLGGSTSIQG RYCSSSLDHE LDQDFSCITN 180 DPRTHHPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00512	DAP	Transfer from AT5G15830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009126070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240087	0.0	AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126070.1	1e-136	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013659596.1	1e-136	basic leucine zipper 43-like
Swissprot	Q9FMC2	4e-30	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A3P5ZWT7	1e-135	A0A3P5ZWT7_BRACM; Uncharacterized protein
TrEMBL	M4E437	1e-135	M4E437_BRARP; Uncharacterized protein
STRING	Bra023540.1-P	1e-136	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	2e-90	basic leucine-zipper 3

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]