PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009125756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 44375.4 Da PI: 4.3784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.3 | 2.3e-47 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtd elv +yLk+kv gkkl + ++i+evdiyk+eP+dLp k +k+++ +w+fF++r+kky+tg r+nrat+ g+Wk+tgk+++vl XP_009125756.1 6 LAPGFRFHPTDIELVRYYLKRKVLGKKLLV-DAIPEVDIYKFEPSDLPdKsFIKSGDLKWHFFCPREKKYSTGVRANRATACGFWKTTGKERDVL 99 579************************999.89**************96446777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +ge+ g ktLv++ g++p+ge+tdWvmheyrle XP_009125756.1 100 C-NGEVAGKIKTLVYHFGKSPRGERTDWVMHEYRLE 134 *.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-56 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.933 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-25 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MGKTQLAPGF RFHPTDIELV RYYLKRKVLG KKLLVDAIPE VDIYKFEPSD LPDKSFIKSG 60 DLKWHFFCPR EKKYSTGVRA NRATACGFWK TTGKERDVLC NGEVAGKIKT LVYHFGKSPR 120 GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP FKDEDWSDED 180 VPATNGPAII HGETSLVVAS SSRDPTKDCF GGMISESCVS DYLSATTTTT TRDLPQLNDA 240 ANTPMSAAPL LDSNSTASLA PPTLEAPTNN YDDLYSMLDL FVDEDEFLRF PEPSNYEIRH 300 DPNVSAPICL GEGEDIFSEL PDFSNMQHNS MPRTPSYDLI ENSELYLDLQ DLTDPLAPSQ 360 IGNASDSYLS NQGQFDFSAA DNDDDPYGFS ASMGQGPDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-43 | 6 | 156 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.14453 | 0.0 | flower| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009125756.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125756.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 0.0 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A398A858 | 0.0 | A0A398A858_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EIM5 | 0.0 | M4EIM5_BRARP; Uncharacterized protein | ||||
STRING | Bra028640.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 1e-166 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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