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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009125422.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 310aa MW: 36976.6 Da PI: 6.8143 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009125422.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 73.7 | 3.1e-23 | 45 | 127 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ +e+++L+ +r+e+++++ ++k++k lWe v +km+++gf rs++qCk+kw+nl ryk ++++e + + ++++p++++++
XP_009125422.1 45 QWSIDETKELLGIREELDQTFMETKRNKLLWEVVVAKMADKGFARSAEQCKSKWKNLVSRYKVCETTEPE---PIRQQFPFYNEIQ 127
7********************************************************************8...566789***9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MDRRNPFHHH DHQLYQLIQQ QQLPPPPQST TVAMDLGGGG ERIPQWSIDE TKELLGIREE 60 LDQTFMETKR NKLLWEVVVA KMADKGFARS AEQCKSKWKN LVSRYKVCET TEPEPIRQQF 120 PFYNEIQSIF TARMQRMLWS EPRTSSKRKH NQFSSDEEVE EVAELNQDIN KELLSFVETQ 180 KKDTEVITTS TFTNPKKRAK KGKGTSKAET AGSTLKEMLE DFMRQTVKME KEWRDAWEMK 240 AREKEKREKE WQRRMAELEE ERAAAERRWM EREDERRLRE EARAQKRDTL IDVLLNQLNR 300 DQDDDQHQGF
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC240935 | 0.0 | AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence. |