PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 362aa MW: 41615.1 Da PI: 7.758

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009125331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.4e-12	76	108	3	35
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAAr+sR+RKka++++Le+ XP_009125331.1 76 PDKTQRRLAQNREAARKSRLRKKAYVQQLETSR 108 689**************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-5	74	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.76	76	118	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-9	76	106	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	78	119	No hit	No description
SuperFamily	SSF57959	2.32E-7	78	113	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-30	164	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MNTTSTHFVP PRRFEIYETT LNQVSMWEES FKNNGGIFTP NSIIIPTDAK LDSLSEDTSH 60 GTPHKFDQEA STSRHPDKTQ RRLAQNREAA RKSRLRKKAY VQQLETSRLK LIHLEQELDR 120 ARQQGFYEGN RVDTNALGFS DKMSSGIVAF EMEYGHWVEE QNRQISELRT VLQGQVSDVE 180 LRLLVDNAMK HYFQLFRMKS AAAKIDVFYI MSGMWKTSAE RFFMWIGGFR PSELLKVLLP 240 HFDPLMDQQV LDVCNLRQSC QQAEDAVSQG MEKLQHTLAD SVAAGNLGEG SYIPQITCAM 300 ERLEALVSFV NQADHLRHET LQQMHRILTT RQAARGLLAL GEYFQRLRAL SSSWATRQRE 360 PT

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MNTTSTHFVP PRRFEIYETT LNQVSMWEES FKNNGGIFTP NSIIIPTDAK LDSLSEDTSH  60
GTPHKFDQEA STSRHPDKTQ RRLAQNREAA RKSRLRKKAY VQQLETSRLK LIHLEQELDR  120
ARQQGFYEGN RVDTNALGFS DKMSSGIVAF EMEYGHWVEE QNRQISELRT VLQGQVSDVE  180
LRLLVDNAMK HYFQLFRMKS AAAKIDVFYI MSGMWKTSAE RFFMWIGGFR PSELLKVLLP  240
HFDPLMDQQV LDVCNLRQSC QQAEDAVSQG MEKLQHTLAD SVAAGNLGEG SYIPQITCAM  300
ERLEALVSFV NQADHLRHET LQQMHRILTT RQAARGLLAL GEYFQRLRAL SSSWATRQRE  360
PT

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009125331.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353085	0.0	AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125331.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Refseq	XP_009125332.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Refseq	XP_013678618.1	0.0	transcription factor TGA4
Refseq	XP_013678625.1	0.0	transcription factor TGA4
Refseq	XP_013678633.1	0.0	transcription factor TGA4
Refseq	XP_018512473.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Refseq	XP_018512474.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A3P6A6G7	0.0	A0A3P6A6G7_BRACM; Uncharacterized protein
TrEMBL	M4EII9	0.0	M4EII9_BRARP; Uncharacterized protein
STRING	Bra028604.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]