 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009124885.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
B3 |
| Protein Properties |
Length: 264aa MW: 30058.3 Da PI: 7.5407 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009124885.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 101.9 | 3.6e-32 | 32 | 140 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f+k ltpsdv+k++rlv+pk++ae+h + +e+++ lt+edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v F+
XP_009124885.1 32 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnagddvaaAETTEKGMLLTFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLHAGDVVFFQ 126
99******************************99999977788**************************************************** PP
E-SSSEE..EEEEE CS
B3 84 ldgrsefelvvkvf 97
+++ + + +++++
XP_009124885.1 127 RHRFDLHRVFIGWR 140
54325555566665 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0080113 | Biological Process | regulation of seed growth |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MSGNHYSRDI HHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL 60
NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG 120
DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST 180
SSYPNIHQEY SHYGAVAEIP TVVTGSSRTV RLFGVNLECH GDVVETPPCP DGYNGQHFYY 240
YSTPDPMNIS FAGEAMEQVG DGRR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 6e-48 | 25 | 145 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 6e-48 | 25 | 145 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
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