PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124702.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 439aa    MW: 48828.3 Da    PI: 5.401
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31228282155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  XP_009124702.1 228 KPRMRWTPELHESFLKSVNKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 282
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.015225285IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-29226283IPR009057Homeodomain-like
SuperFamilySSF466898.06E-17227282IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23228283IPR006447Myb domain, plants
PfamPF002492.1E-8230281IPR001005SANT/Myb domain
PfamPF143795.6E-22318364IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNSHRLVVST AQEECNKGIQ KACSSSLSPA FNFLNVQPET TSKSPFIRSQ SPDWPKNSTF  60
SRSSTFCTNL YSSSSSANET QKHLGNSLPF LPDPSASASG VESARSPSVF SEDLGNPFDG  120
DNNSSLVKDF FNLSADACSN GGGYHDLDCS NDTLSDQLEL QFLSDELELA ITDRAETPRL  180
DEIYEKPMAS PNPVTVLSPS QRCDAGAMCI DPVSSLPSPR SSAAANHKPR MRWTPELHES  240
FLKSVNKLEG PEKATPKAVL KLMNVEGLTI YHVKSHLQKY RLAKYMPEKK EEKKNVNSEE  300
KKLAMSNSEA DEKKKGAIQL TEALRMQMEV QKQLHEQLEV QRVLQLRIEE HAKYLEKMLE  360
EQRKAGRLFS SSSSSQTLLS PSDDETRPDS QNMSKTEASL PQPSSSAKNI ASETEDDQCE  420
SPQKRRRLEN NTEPQDSER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-25228285259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423427KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.39990.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1278610.0EF127861.1 Brassica rapa subsp. chinensis MYBogu mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124702.10.0PREDICTED: myb family transcription factor PHL6
RefseqXP_009124703.10.0PREDICTED: myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLM4FE430.0M4FE43_BRARP; Uncharacterized protein
STRINGBra039364.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]