PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009124606.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 413aa MW: 44979.7 Da PI: 5.8026

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009124606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.5	4.1e-31	209	267	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ XP_009124606.1 209 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTAEHNHP 267 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-30	202	269	IPR003657	WRKY domain
PROSITE profile	PS50811	33.063	203	269	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-26	206	269	IPR003657	WRKY domain
SMART	SM00774	2.3E-37	208	268	IPR003657	WRKY domain
Pfam	PF03106	9.0E-26	210	267	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MCSVFEMDNY QGDLRDILRG IDGGHVLSPE LAPSPPRIWP LPQPSSSDLH PINPFGDPFV 60 SMTDPLLQEL NAVTNSGYFS TADNNNNNCF LVPKVLEDDH IKSQCSVFPR IRISHSNIIS 120 DSSPCNSPVM SAHVFAAAAA ASPRGVINVD TNSPRNCLLV DGNTFSSQIQ ISSPPNLGPK 180 RRKSQAKKVV CIPAPAAMNS RSSGEVVPSD LWAWRKYGQK PIKGSPFPRG YYRCSSSKGC 240 SARKQVERSR TDPNMLVITY TAEHNHPWPI QRNALAGSTR SSSNPNSSKS STATAPTNGP 300 PNNTHSPSSA SPSPLPASAV KDEQREEDME LENVENDFGN QFSPYRPELH DQHQPDDFFA 360 DLEELEEDSL SMFLSQGVAG YGSNKTTASN GISDFVGWSG ANNSNDDRDL RSF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MCSVFEMDNY QGDLRDILRG IDGGHVLSPE LAPSPPRIWP LPQPSSSDLH PINPFGDPFV  60
SMTDPLLQEL NAVTNSGYFS TADNNNNNCF LVPKVLEDDH IKSQCSVFPR IRISHSNIIS  120
DSSPCNSPVM SAHVFAAAAA ASPRGVINVD TNSPRNCLLV DGNTFSSQIQ ISSPPNLGPK  180
RRKSQAKKVV CIPAPAAMNS RSSGEVVPSD LWAWRKYGQK PIKGSPFPRG YYRCSSSKGC  240
SARKQVERSR TDPNMLVITY TAEHNHPWPI QRNALAGSTR SSSNPNSSKS STATAPTNGP  300
PNNTHSPSSA SPSPLPASAV KDEQREEDME LENVENDFGN QFSPYRPELH DQHQPDDFFA  360
DLEELEEDSL SMFLSQGVAG YGSNKTTASN GISDFVGWSG ANNSNDDRDL RSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	183	269	2	79	Disease resistance protein RRS1
5w3x_D	4e-25	183	269	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009124606.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228343	0.0	AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBank	AY052646	0.0	AY052646.1 Arabidopsis thaliana WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
GenBank	BT006468	0.0	BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124606.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X1
Swissprot	Q9SA80	0.0	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	M4FIV0	0.0	M4FIV0_BRARP; Uncharacterized protein
STRING	Bra041029.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-180	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]