PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009124410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 48928.9 Da PI: 6.3841 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.3 | 7.1e-07 | 198 | 218 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_009124410.1 198 CTICGKGFKRDANLRMHMRGH 218 *******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.032 | 196 | 223 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.024 | 196 | 218 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.78E-5 | 197 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-5 | 198 | 218 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 198 | 218 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 50 | 249 | 282 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 45 | 287 | 309 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
METGEDDLCQ NNWGSASILD YEMAMEDEEE GEPNLHVFKA SSSGKDNNNN NNGGQASVQG 60 VKAQAWDPRT MLCNLSFMEQ KIHELQGLVH LILGRNGQLQ DEQQQLITAD LTSIIIQLIS 120 TAGSLLPSVN MLSTTAPGSA LFPFPREANN LASQTLNNGG ASQELEDDAE EGENLPPGSY 180 EIKQLEKEEI LAPHTNFCTI CGKGFKRDAN LRMHMRGHGD QYKTPAALAK PPTKETLPGS 240 DAPMLIKRYS CPFPGCKRNK DHKRFQPLKT ILCVKNHYKR THCDKSFTCS RCHTKKFSVI 300 ADLKTHEKHC GQNKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPLEDTKP SAAASSQRGS 360 SGCGNSNNNA AMVSFSLGSA ANANQETSQP CVMDGKTSFE ESFSPLSFDI CNFGGFPRSI 420 FDDSFQMLIS SACGCSPING GVGSVSDTSL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.605 | 0.0 | bud| leaf| root| silique |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009124410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009124410.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A397Y4G4 | 0.0 | A0A397Y4G4_BRACM; Uncharacterized protein | ||||
STRING | Bra040971.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6977 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |